The non-profit Bioinformatics Organization is pleased to announce a new course on gene expression analysis and the scheduling of more introductory and intermediate "For Biologists" courses for this February:
1. GENE EXPRESSION ANALYSIS 2. PERL FOR BIOLOGISTS, LEVEL 1 3. R FOR BIOLOGISTS, LEVEL 1 4. PERL FOR BIOLOGISTS, LEVEL 2 5. R FOR BIOLOGISTS, LEVEL 2
See below for details.
The "For Biologists" courses are designed to help researchers learn how to use computer scripts to automate certain tasks in their research. Armed with some knowledge and hands-on experience with these tools, scientists will be able to perform basic software development tasks and phrase research questions in the context of the tools. As a result, they will be able to appreciate and use computers better in their organization and communicate better with their IT group.
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1. GENE EXPRESSION ANALYSIS Analyzing Affymetrix Gene Expression Data February 26-March 2, 2007
DESCRIPTION: This course helps to demystify Affymetrix analysis so that any researcher can take the basic steps needed to go from a chip image to a list of genes that are up- or down-regulated in an experiment. It is geared towards researchers who conduct microarray experiments to study genome-wide expression changes and understand the underlying mechanisms of gene regulation in samples of interest. Various tools will be covered, e.g. GCOS, Excel, R, Matlab, and free tools like Dchip.
SCHEDULE: Each lecture will start at 16:30 UTC and last 2 to 3 hours with a break half-way through it, depending on the topics covered.
FOR MORE INFORMATION: To find out more information on the course, including the registration process, please see the course schedule page: http://edu.bioinformatics.org/AK
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2. PERL FOR BIOLOGISTS, LEVEL 1 February 12-16, 2007
DESCRIPTION: This course is designed to help researchers learn how to use the scripting language Perl to automate certain tasks in their research. The topics taught involve laboratory scenarios and datasets, and include installing and running simple Perl programs; variables (scalars, arrays); printing; variable interpolation; string operations; mathematical, conditional and logical operators; file input/output; loops (if-then-else, for, while); list operations; regular expressions; and functions. Students will be assigned a project at the end of the week.
SCHEDULE: Each lecture will start at 16:30 UTC and last 45 to 90 minutes, depending on the topics covered.
DESCRIPTION: This course is designed to help researchers learn how to use the statistical scripting language R for data analysis. The topics taught involve laboratory scenarios and datasets, and include installing and running R; understanding the R interactive environment; creating, storing and manipulating R data objects; reading data from files; applying built-in functions on data; for-loops, if-then-else statements; scripts; functions; and packages. Students will be assigned a project at the end of the week.
SCHEDULE: Each lecture will start at 18:00 UTC and last 45 to 90 minutes, depending on the topics covered.
FOR MORE INFORMATION: To find out more information on the course, including the registration process, please see the course schedule page: http://edu.bioinformatics.org/AJ
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4. PERL FOR BIOLOGISTS, LEVEL 2 February 19-23, 2007
DESCRIPTION: This course is designed to help researchers understand the scripting language Perl. It is a continuation of Perl for Biologists, Level 1 and covers advanced topics such as scripting with BioPerl, the Perl DBI and DBD for connecting to databases, high-throughput BLAST analysis, and writing multi-function scripts and converting them into Perl modules and packages.
SCHEDULE: Each lecture will start at 16:30 UTC and last 45 to 90 minutes, depending on the topics covered.
FOR MORE INFORMATION: To find out more information on the course, including the registration process, please see the course schedule page: http://edu.bioinformatics.org/AG
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5. R FOR BIOLOGISTS, LEVEL 2 February 19-23, 2007
DESCRIPTION: This course is designed to help researchers understand the data analysis/visualization language R. It is a continuation of R for Biologists, Level 1 and covers advanced topics such as working with Affymetrix CEL files and data analysis with the Bioconductor packages.
SCHEDULE: Each lecture will start at 18:00 UTC and last 45 to 90 minutes, depending on the topics covered.
FOR MORE INFORMATION: To find out more information on the course, including the registration process, please see the course schedule page: http://edu.bioinformatics.org/AH